Publications
AI-driven Simulation and Design Lab
Name*: Contributed equally
Name: Corresponding author
Uncovering design and assembly rules for mRNA– DNA origami
*Jack Y. Wang, *Jared Huzar, *Myoungseok Kim, Taeyoung Ryu, Nahtalee R. Lomeli, Derfogail Delcassian, Do-Nyun Kim, and Grigory Tikhomirov
submitted, (2025)
Classifying multi-state DNA origami: an automated approach with minimal labeling and confidence-based filtering
Hongchang Lee, Seo Hyun Kwon, and Do-Nyun Kim
Selecting laminate configurations for training a DeepONet to predict IHD calibration constants in FRP laminates
Seung-Woo Lee, Teubes Christiaan Smit, Do-Nyun Kim, and Robert Grant Reid
in revision, (2025)
Molecular information interchange using multiplexed reconfiguration of DNA origami
*Myoungseok Kim, *Dongsik Seo, Grigory Tikhomirov, and Do-Nyun Kim
De novo design of DNA origami with a generative diffusion model
*Chien Truong-Quoc, *Kyounghwa Jeon, Jinho Kim, Seo Hyun Kwon, Dongsik Seo, Chanseok Lee, and Do-Nyun Kim
SNUPI: A computational framework for rapid mechanical analysis of structured DNA assemblies
Jun Hyeong Park, Do-Nyun Kim, and Jae Young Lee
Harnessing circular hole arrays to reduce the thermal deformation of sandwich composite panels
Hui Sik Kim, Sang Hoon Yoon, Jun Sub Bae, and Do-Nyun Kim
Membrane-targeted DNA frameworks with biodegradability recover cellular function and morphology from frozen cells
*Yedam Lee, *Woo Hyuk Jung, *Kyounghwa Jeon, Eui Bum Choi, Taeyoung Ryu, Chanseok Lee, Do-Nyun Kim, and Dong June Ahn
Trends in Biotechnology, published online, (2025)
A computational framework for investigating the mechanical stresses on breast implants under dynamic loading conditions
Seungkwan Lee, Ju Yeon Park, Sinwoo Park, Jungju Kim, Il-Seok Jang, Ju-Dong Song, and Do-Nyun Kim
Annals of Biomedical Engineering, published online, (2025)
Interpolation Mesh-Graph Net using disconnected spatial graphs of higher order element based meshes
Jozsef Adam Sebestyen and Do-Nyun Kim
Engineering Applications of Artificial Intelligence, 159, Part C: 111535, (2025)
Long-staple design approach towards the scalable production of scaffolded DNA origami
Chanseok Lee, Yanggyun Kim, Kyounghwa Jeon, Taeyoung Ryu, and Do-Nyun Kim
Nanoscale Horizons, 10: 2584-2592, (2025)
An adaptive procedure for the analysis of transient wave propagation using interpolation covers
Jeehwan Lee, Giseok Yun, and Do-Nyun Kim
Computer Methods in Applied Mechanics and Engineering, 445: 118167, (2025)
Nested surrogate model for discrete parameter optimization of structural reliability analysis
Hongseok Kim, Dooyoul Lee, and Do-Nyun Kim
Proceedings of the Institution of Mechanical Engineers, Part O: Journal of Risk and Reliability, 239: 984–999, (2025)
Density-based topology optimization using a deformable mesh
Kyusoon Jung and Do-Nyun Kim
Computers & Structures, 316: 107879, (2025)
Maintenance decision-making model for gas turbine engine component considering the inspection threshold and partial repair
Hongseok Kim, Do-Nyun Kim, and Dooyoul Lee
Engineering Applications of Artificial Intelligence, 156: 111269, (2025)
